SeasonRound 1st Leg2nd LegAggregate
1961/62QServette Geneva (SWI) vs Hibernians5-02-1(7-1)
1962/63R1Floriana vs Ipswich Town (ENG)1-40-10(1-14)
1963/64R1Dukla Prague (CZE) vs Valletta6-02-0(8-0)
1964/65R1Sliema Wanderers vs Dinamo Bucharest (ROM)0-20-5(0-7)
1965/66R1Panathinaikos (GRE) vs Sliema Wanderers4-10-1(4-2)
1966/67QSliema Wanderers vs CSKA Sofia (BUL)1-20-4(1-6)
1967/68R1Manchester United (ENG) vs Hibernians4-00-0(4-0)
1968/69R1Floriana vs Lahden Reipas (FIN)1-10-2(1-3)
1969/70R1Hibernians vs Spartak Trnava (CZE)2-20-4(2-6)
1970/71R1Sporting Lisboa (POR) vs Floriana5-04-0(9-0)
1971/72R1IA Akranes (ICE) vs SLIEMA WANDERERS0-40-0(0-4)
 R2Celtic Glasgow (SCO) vs Sliema Wanderers5-02-1(7-1)
1972/73R1Sliema Wanderers vs Gornik Zabzre (POL)0-50-5(0-10)
1973/74R1Floriana vs Club Bruges (BEL)0-80-2(0-10)
1974/75R1Valletta vs HJK Helsinki (FIN)1-01-4(2-4)
1975/76R1Floriana vs Hajduk Split (YUG)0-50-3(0-8)
1976/77R1Sliema Wanderers vs Turun Palloseura (FIN)2-10-1(2-2)*
1977/78R1Floriana vs Panathinaikos (GRE)1-10-4(1-5)
1978/79R1Grasshoppers (SWI) vs Valletta8-05-3(13-3)
1979/80R1Dundalk (EIR) vs Hibernians2-00-1(2-1)
1980/81QHonved (HUN) vs Valletta8-03-0(11-0)
1981/82R1Hibernians vs Red Star Belgrade (YUG)1-21-8(2-10)
1982/83R1Hibernians vs Widzew Lodz (POL)1-41-3(2-7)
1983/84R1Hamrun Spartans vs Dundee United (SCO)0-30-3(0-6)
1984/85R1FK Austria Memphis (AUT) vs Valletta4-04-0(8-0)
1985/86R1Rabat Ajax vs Omonia Nicosia (CYP)0-50-5(0-10)
1986/87R1FC Porto (POR) vs Rabat Ajax9-01-0(10-0)
1987/88R1Rapid Wien (AUT) vs Hamrun Spartans6-01-0(7-0)
1988/89R1Hamrun Spartans vs Nentori Tirana (ALB)2-10-2(2-3)
1989/90R1Sliema Wanderers vs Nentori Tirana (ALB)1-00-5(1-5)
1990/91R1Valletta vs Rangers Glasgow (SCO)0-40-6(0-10)
1991/92R1Hamrun Spartans vs Benfica (POR)0-60-4(0-10)
1992/93QValletta vs Maccabi Tel Aviv (ISR)1-20-1(1-3)
1993/94QEkranas (LIT) vs FLORIANA0-10-1(0-2)
 R1Porto (POR) vs Floriana2-00-0(2-0)
1997/98Q1Valletta vs Skonto Riga (LAT)1-00-2(1-2)
1998/99Q1Valletta vs Anorthosis Famagusta (CYP)0-20-6(0-8)
1999/2000Q1Barry Town (WAL) vs VALLETTA0-02-3(2-3)
 Q2SK Rapid Wien vs Valletta3-02-0(5-0)
2000/01Q1Birkirkara vs KR Reykjavík (ICE)1-21-4(2-6)
2001/02Q1Valletta vs FC Haka Valkeakoski (FIN)0-00-5(0-5)
2002/03Q1HIBERNIANS vs Shelbourne FC (IRE)2-21-0(3-2)
 Q2Boavista FC vs Hibernians4-03-3(7-3)
2003/04Q1SLIEMA WANDERERS vs Skonto Riga (LAT)2-01-3(3-3) **
 Q2FC Copenhagen (DEN) vs Sliema Wanderers4-16-0(10-1)
2004/05Q1Sliema Wanderers vs FBK Kaunas (LIT)0-21-4(1-6)
2005/06Q1Sliema Wanderers vs FC Sheriff Tiraspol (MOL)1-40-2(1-6)
2006/07Q1Birkirkara vs B36 Torshavn (FAR)0-32-2(2-5)
2007/08Q1Marsaxlokk vs FK Sarajevo (BOS)0-61-3(1-9)
2008/09Q1Valletta FC vs FC Artmedia Petržalka (SVK)0-20-1(0-3)
2009/10Q1Hibernians vs FK Mogren (MNE)0-20-4(0-6)
2010/11Q1Santa Coloma (AND) vs BIRKIRKARA0-3 ***3-4(3-7)
 Q2Birkirkara vs MSK Zilina (SVK)1-00-3(1-3)
2011/12Q1SP Tre Fiori (SMR) vs VALLETTA0-31-2(1-5)
 Q2Valletta vs FK Ekranas (LIT)2-30-1(2-4)
2012/13Q1VALLETTA vs FC Lusitans (AND)8-01-0(9-0)
 Q2Valletta vs FK Partizan Belgrade (SRB)1-41-3(2-7)
2013/14Q2Birkirkara vs NK Maribor (SLO)0-00-2(0-2)
2014/15Q2Valletta vs Qarabagh FK (AZE)0-10-4(0-5)
2015/16Q2Hibernians vs Maccabi Tel Aviv (ISR)2-11-5(3-6)
2016/17Q1VALLETTA vs B36 Tórshavn (FAR)1-01-2(2-2) ****
 Q2Valletta vs FK Crvena zvezda (SRB)1-21-2(2-4)
2017/18Q1HIBERNIANS vs FCI Tallinn (EST)2-01-0(3-0)
 Q2Hibernians vs FC (Red Bull) Salzburg (AUT)0-30-3(0-6)
2018/19Q1FK Kukesi (ALB) vs Valletta0-01-1(1-1) *****
2019/20Q1F91 Dudelange (LUX) vs VALLETTA2-21-1(3-3) ******
Q2Ferencvarosi TC (HUN) vs Valletta3-11-14-2

* Turun Palloseura qualify on the away goal.
** Sliema Wanderers qualify on the away goal.
*** Birkirkara were awarded a walk-over (3-0) in the first leg.
**** Valletta qualify on the away-goals rule
***** Kukesi qualify on the away-goals rule
****** Valletta qualify on the away-goals rule.
Notes:-

  • Names of local clubs in uppercase indicate that the club moved to the next round.
  • Between seasons 1994-95 and 1996-97, no Maltese club participated in this competition because with the introduction of the Champions League, clubs coming from small nations were excluded. However they were re-instated in season 1997-98