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| Saturday 15th & Sunday 16th October 2016 | |||||
| Under 15 – K.O. 1st Round | |||||
| Qormi | vs | Paola Hibs | 0 | : | 1 |
| Zabbar | vs | Luqa (pen) | 5 | : | 6 |
| Melita | vs | Birkirkara | 1 | : | 0 |
| Tarxien | vs | Gozo | 0 | : | 2 |
| Lija/Iklin | vs | Zebbug (pen) | 5 | : | 3 |
| Zejtun | vs | Sliema | 4 | : | 1 |
| Marsa | vs | Balzan | 0 | : | 12 |
| Xghajra | vs | Dingli | 1 | : | 0 |
| Mosta | vs | Kirkop | 1 | : | 0 |
| Attard | vs | Mqabba | 5 | : | 1 |
| Pieta | vs | San Gwann (pen) | 0 | : | 3 |
| St. Andrews | vs | Mtarfa | 8 | : | 0 |
| Mgarr | vs | Valletta | 0 | : | 3 |
| Mellieha | vs | Pembroke | 1 | : | 4 |
| Naxxar | vs | Hamrun | 0 | : | 4 |
| Under 17 – K.O. 1st Round | |||||
| Hamrun | vs | St. Venera | 8 | : | 0 |
| Fgura | vs | Msida (pen) | 3 | : | 5 |
| Mqabba | vs | Mellieha | 1 | : | 4 |
| Attard | vs | Kirkop | 1 | : | 2 |
| Melita | vs | Floriana | 1 | : | 3 |
| Birkirkara | vs | Mosta | 1 | : | 0 |
| Paola Hibs | vs | Rabat | 3 | : | 0 |
| Pieta | vs | Tarxien | 4 | : | 0 |
| San Gwann | vs | Zebbug | 2 | : | 0 |
| Swieqi | vs | St. Andrews | 1 | : | 9 |
| Zabbar | vs | Qormi | 0 | : | 3 |
| Valletta | vs | Luqa | 5 | : | 0 |
| Balzan | vs | Ghaxaq | 2 | : | 1 |
| Pembroke | vs | Lija/Iklin | 2 | : | 0 |
| Marsa | vs | Sliema | 0 | : | 5 |
| Zejtun | vs | Sirens | 0 | : | 1 |