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| Saturday 22nd October 2016 | |||
| Sec C – U 17 | Zejtun | 0 – 1 | Fgura |
| Sec D – U 15 | Ghaxaq | 1 – 1 | Fgura |
| Sec D – U 17 | Ghaxaq | 0 – 2 | Birzebbugia |
| Sec C – U 15 | Zabbar | 4 – 1 | Sliema |
| Sec E – U 17 | Xghajra | 1 – 1 | Sirens |
| Sec D – U 15 | Zebbug | 1 – 0 | Attard |
| Sec C – U 17 | Rabat | 3 – 5 | Lija/Iklin |
| Sec A – U 15 | San Gwann | 6 – 0 | Valletta |
| Sec E – U 17 | Gzira | 2 – 0 | Mtarfa |
| Sunday 23rd October 2016 | |||
| Sec B – U 17 | Floriana | 3 – 1 | Pembroke |
| Sec A – U 15 | Pieta | 4 – 0 | Birkirkara |
| Sec B – U 17 | Paola Hibs | 3 – 1 | Qormi |
| Sec A – U 15 | Qormi | 0 – 0 | Mosta |
| Sec B – U 17 | Kirkop | 1 – 3 | Melita |
| Sec A – U 15 | Melita | 1 – 3 | St. Andrews |
| Sec B – U 17 | Zebbug | 1 – 0 | Sliema |
| Sec C – U 17 | Swieqi | 6 – 0 | Mqabba |
| Sec D – U 15 | Mqabba | 4 – 2 | Rabat |
| Sec C – U 17 | Tarxien | 1 – 2 | Zabbar |
| Sec E – U 15 | Dingli | 1 – 2 | Xghajra |
| Sec D – U 15 | Sirens | 3 – 1 | Zejtun |
| Sec E – U 17 | Kalkara | 1 – 3 | Marsa |
| Sec C – U 15 | Marsa | 0 – 2 | Luqa |
| Sec D – U 17 | Luqa | 2 – 1 | Mgarr |
| Sec C – U 15 | Mellieha | 0 – 3 | Gozo |
| Sec D – U 17 | Mellieha | 3 – 1 | Naxxar |
| Sec D – U 17 | Msida | 1 – 1 | Attard |